Surgical Science · Microbiome · Immunity

Where surgery, immunity, and the microbiome converge

We are a collaborative laboratory investigating how the microbiome and host shape outcomes after surgery, trauma, and critical illness. Our independent research programs unite fundamental discovery with translational science to reduce infectious burden, improve vascular health, and advance patient care.

SIM Lab members

Our History

A shared scientific vision, built across generations

Founded by Dr. John Alverdy, the laboratory has long focused on understanding how interactions between the intestinal microbiome and the host influence the development of life-threatening infections following surgery, trauma, and critical illness. Through decades of NIH-funded research, the lab has advanced fundamental insights into microbial virulence, host-pathogen signaling, and translational strategies to prevent infection.

In 2024, the laboratory expanded with the recruitment of Dr. Sara Gaines and Dr. Lavanya Visvabharathy, who established independent research programs while remaining united under a common scientific vision. Together, the group brings expertise spanning surgical science, microbiome biology, vascular remodeling, and human immunology. This interdisciplinary structure reflects the lab's mission to bridge traditionally separate fields and create a collaborative environment where discoveries at the interface of surgery, host immunity, and the microbiome can be translated into improved patient care.

Research

Three programs, one mission

SIM Lab brings together complementary programs in surgical microbiome science, vascular remodeling, and T-cell immunology to understand how host-microbe interactions shape disease and recovery.

"Mimi" Sara Gaines, MD
Principal Investigator
Vascular Science

"Mimi" Sara Gaines, MD

Dr. Gaines studies how the dysbiotic gut microbiome contributes to uremic vascular toxicity and arteriovenous fistula failure in dialysis patients.

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Sanjiv Hyoju headshot
Principal Investigator
Surgical Microbiome

Sanjiv Hyoju, MD, PhD

Dr. Sanjiv Hyoju studies how the gut microbiome, diet, and antibiotics shape infection-related surgical complications, including wound infection, anastomotic leak, peritonitis, and sepsis. His work uses surgical mouse models and microbiome-informed therapeutics to reduce surgical morbidity and advance translational care.

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Lavanya Visvabharathy headshot
Principal Investigator
T-Cell Immunology

Lavanya Visvabharathy, PhD

Dr. Lavanya Visvabharathy studies how T cells respond to infection and how immune memory is shaped by viral and bacterial pathogens. Her laboratory combines human immunology, systems biology, and immunometabolism to understand how infections can produce lasting changes in immune function and contribute to chronic disease.

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Team

The people behind the science

We are a growing team of surgeons, researchers, and trainees united by the goal of improving outcomes for surgery patients.

"Mimi" Sara Gaines, MD

"Mimi" Sara Gaines, MD

Principal Investigator, vascular surgeon-scientist, Associate Program Director for General Surgery, and Co-Director of the Surgeon Scientist Training Pathway.

Sanjiv Hyoju headshot

Sanjiv Hyoju, MD, PhD

Assistant Research Professor, Department of Surgery, University of Chicago.

Lavanya Visvabharathy headshot

Lavanya Visvabharathy, PhD

Assistant Research Professor, Department of Surgery, University of Chicago.

Meet the Full Lab

See trainees, staff, collaborators, and alumni connected to the lab's research programs.

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Contact

Get in touch

Location
Department of Surgery
University of Chicago
5841 S. Maryland Ave, Chicago, IL 60637

Email
Sara Gaines: sgaines@uchicago.edu
Lavanya Visvabharathy: Lavanya.Visvabharathy@bsd.uchicago.edu

Collaborations
We actively seek collaborators in microbiome science, nanomedicine, vascular biology, and translational surgery.